Report Type: Expression Report Date: 03:46PM 02/10/2009 ______________________________________________________________________ Filename: Arabidopsis lcWS-4.CHP Probe Array Type: ATH1-121501 Algorithm: Statistical Probe Pair Thr: 8 Controls: Antisense ______________________________________________________________________ Alpha1: 0.05 Alpha2: 0.065 Tau: 0.015 Noise (RawQ): 1.020 Scale Factor (SF): 16.509 TGT Value: 500 Norm Factor (NF): 1.000 ______________________________________________________________________ Background: Avg: 30.11 Std: 0.21 Min: 29.60 Max: 30.60 Noise: Avg: 0.92 Std: 0.03 Min: 0.90 Max: 1.00 Corner+ Avg: 62 Count: 32 Corner- Avg: 11360 Count: 32 Central- Avg: 9442 Count: 9 ______________________________________________________________________ The following data represents probe sets that exceed the probe pair threshold and are not called "No Call". Total Probe Sets: 22810 Number Present: 12801 56.1% Number Absent: 9656 42.3% Number Marginal: 353 1.5% Average Signal (P): 1392.3 Average Signal (A): 52.9 Average Signal (M): 168.1 Average Signal (All): 806.4 ______________________________________________________________________ Housekeeping Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-R2-AT-ACTIN 13863.1 P 4559.7 P 14829.4 P 11084.08 1.07 AFFX-R2-AT-GAPDH 14254.9 P 17692.9 P 15973.86 1.24 AFFX-R2-AT-UBQ 10942.8 P 38511.7 P 24727.28 3.52 AFFX-ATHAL-ACTIN 609.7 P 3692.7 P 9027.8 P 4443.37 14.81 AFFX-ATHAL-GAPDH 6687.5 P 13049.7 P 21231.8 P 13656.33 3.17 AFFX-ATHAL-UBQ 5981.1 P 7299.4 P 32050.8 P 15110.42 5.36 ______________________________________________________________________ Spike Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-BIOB 7660.7 P 11811.2 P 9639.1 P 9703.64 1.26 AFFX-BIOC 19885.5 P 11542.7 P 15714.11 0.58 AFFX-BIOD 28361.5 P 57635.7 P 42998.61 2.03 AFFX-CRE 153282.4 P 180015.1 P 166648.78 1.17 AFFX-DAP 42.2 A 58.9 A 47.2 A 49.43 1.12 AFFX-LYS 39.3 A 50.3 A 18.1 A 35.91 0.46 AFFX-PHE 80.5 A 6.6 A 6.9 A 31.35 0.09 AFFX-THR 16.6 A 57.9 A 49.0 A 41.16 2.96 AFFX-TRP 35.0 A 4.0 A 53.9 A 30.97 1.54 AFFX-R2-EC-BIOB 11271.7 P 11371.4 P 11312.3 P 11318.47 1.00 AFFX-R2-EC-BIOC 26470.3 P 29345.8 P 27908.09 1.11 AFFX-R2-EC-BIOD 58367.8 P 75697.8 P 67032.81 1.30 AFFX-R2-P1-CRE 177597.0 P 200464.9 P 189030.94 1.13 AFFX-R2-BS-DAP 5.3 A 16.5 A 2.2 A 7.98 0.41 AFFX-R2-BS-LYS 9.2 A 32.1 A 66.8 A 36.05 7.22 AFFX-R2-BS-PHE 11.4 A 33.5 A 13.2 A 19.38 1.16 AFFX-R2-BS-THR 7.1 A 2.7 A 10.4 A 6.75 1.47 ______________________________________________________________________