Report Type:	Expression Report
Date:          	04:44PM 01/27/2009
______________________________________________________________________

Filename:		Arabidopsis lcMCE-2.CHP
Probe Array Type:	ATH1-121501
Algorithm:		Statistical
Probe Pair Thr:	8
Controls:		Antisense
______________________________________________________________________

Alpha1:		0.05
Alpha2:		0.065
Tau:		0.015
Noise (RawQ):	1.030
Scale Factor (SF):	16.599
TGT Value:		500
Norm Factor (NF):	1.000
______________________________________________________________________

Background:
	Avg: 29.79	Std: 0.17	Min: 29.40	Max: 30.20
Noise:
	Avg: 0.95	Std: 0.02	Min: 0.90	Max: 1.00
Corner+
	Avg: 72		Count: 32
Corner-
	Avg: 13651		Count: 32
Central-
	Avg: 11491		Count: 9
______________________________________________________________________

The following data represents probe sets that exceed the probe pair threshold 
and are not called "No Call".

Total Probe Sets:	22810
Number Present:	11768	51.6%
Number Absent:	10730	47.0%
Number Marginal:	312	1.4%

Average Signal (P):	1587.2
Average Signal (A):	52.0
Average Signal (M):	168.9
Average Signal (All):	845.6
______________________________________________________________________

Housekeeping Controls:
Probe Set		Sig(5')	Det(5')	Sig(M')	Det(M')	Sig(3')	Det(3')	Sig(all)	Sig(3'/5')
AFFX-R2-AT-ACTIN	12148.7	P	2497.6	P	12897.5	P	9181.24	1.06
AFFX-R2-AT-GAPDH	12292.1	P	 	 	15985.1	P	14138.61	1.30
AFFX-R2-AT-UBQ	4266.9	P	 	 	32922.8	P	18594.84	7.72
AFFX-ATHAL-ACTIN	764.3	P	1970.7	P	8252.6	P	3662.56	10.80
AFFX-ATHAL-GAPDH	6580.1	P	11118.3	P	23611.2	P	13769.86	3.59
AFFX-ATHAL-UBQ	3257.7	P	5386.1	P	24417.9	P	11020.59	7.50
______________________________________________________________________

Spike Controls:
Probe Set		Sig(5')	Det(5')	Sig(M')	Det(M')	Sig(3')	Det(3')	Sig(all)	Sig(3'/5')
AFFX-BIOB		9524.2	P	14365.3	P	10937.9	P	11609.12	1.15
AFFX-BIOC		24271.4	P	 	 	15441.1	P	19856.23	0.64
AFFX-BIOD		35861.7	P	 	 	65202.8	P	50532.28	1.82
AFFX-CRE		170999.6	P	 	 	190984.7	P	180992.14	1.12
AFFX-DAP		73.6	P	9.3	A	61.5	A	48.11	0.84
AFFX-LYS		26.9	A	23.4	A	4.1	A	18.14	0.15
AFFX-PHE		11.8	A	12.0	A	15.3	A	13.02	1.30
AFFX-THR		2.3	A	32.4	A	40.9	A	25.21	17.42
AFFX-TRP		15.1	A	45.1	A	76.0	A	45.42	5.02
AFFX-R2-EC-BIOB	13618.2	P	13344.6	P	12757.7	P	13240.14	0.94
AFFX-R2-EC-BIOC	33578.0	P	 	 	37216.3	P	35397.13	1.11
AFFX-R2-EC-BIOD	66311.9	P	 	 	82526.3	P	74419.11	1.24
AFFX-R2-P1-CRE	196110.0	P	 	 	216171.5	P	206140.75	1.10
AFFX-R2-BS-DAP	4.8	A	68.9	A	5.9	A	26.52	1.22
AFFX-R2-BS-LYS	2.4	A	61.9	A	10.7	A	25.02	4.39
AFFX-R2-BS-PHE	6.7	A	63.9	A	9.5	A	26.70	1.42
AFFX-R2-BS-THR	55.0	A	25.5	A	34.5	A	38.30	0.63
______________________________________________________________________

