Report Type: Expression Report Date: 12:43PM 11/08/2008 ______________________________________________________________________ Filename: Arabidopsis hGSC3.CHP Probe Array Type: ATH1-121501 Algorithm: Statistical Probe Pair Thr: 8 Controls: Antisense ______________________________________________________________________ Alpha1: 0.05 Alpha2: 0.065 Tau: 0.015 Noise (RawQ): 1.160 Scale Factor (SF): 15.375 TGT Value: 500 Norm Factor (NF): 1.000 ______________________________________________________________________ Background: Avg: 32.84 Std: 0.37 Min: 32.10 Max: 34.00 Noise: Avg: 1.03 Std: 0.04 Min: 0.90 Max: 1.10 Corner+ Avg: 93 Count: 32 Corner- Avg: 20921 Count: 32 Central- Avg: 22418 Count: 9 ______________________________________________________________________ The following data represents probe sets that exceed the probe pair threshold and are not called "No Call". Total Probe Sets: 22810 Number Present: 11578 50.8% Number Absent: 10940 48.0% Number Marginal: 292 1.3% Average Signal (P): 1488.0 Average Signal (A): 44.9 Average Signal (M): 156.7 Average Signal (All): 778.8 ______________________________________________________________________ Housekeeping Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-R2-AT-ACTIN 13411.6 P 1875.9 P 10637.0 P 8641.47 0.79 AFFX-R2-AT-GAPDH 6910.0 P 10128.8 P 8519.41 1.47 AFFX-R2-AT-UBQ 5162.2 P 19212.5 P 12187.34 3.72 AFFX-ATHAL-ACTIN 584.1 P 1034.5 P 8138.6 P 3252.40 13.93 AFFX-ATHAL-GAPDH 2545.6 P 6974.0 P 16825.6 P 8781.76 6.61 AFFX-ATHAL-UBQ 3318.1 P 5740.1 P 20680.8 P 9913.00 6.23 ______________________________________________________________________ Spike Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-BIOB 6927.1 P 11691.8 P 9463.7 P 9360.87 1.37 AFFX-BIOC 24368.4 P 13567.0 P 18967.66 0.56 AFFX-BIOD 29751.0 P 59523.5 P 44637.25 2.00 AFFX-CRE 125298.5 P 150098.0 P 137698.28 1.20 AFFX-DAP 107.1 M 11.9 A 5.1 A 41.37 0.05 AFFX-LYS 9.2 A 5.5 A 43.0 A 19.23 4.68 AFFX-PHE 3.9 A 10.6 A 62.6 A 25.69 16.12 AFFX-THR 2.5 A 12.7 A 89.4 A 34.85 35.59 AFFX-TRP 47.8 A 28.2 A 54.6 A 43.50 1.14 AFFX-R2-EC-BIOB 11284.8 P 12731.6 P 11785.3 P 11933.90 1.04 AFFX-R2-EC-BIOC 29349.8 P 28335.3 P 28842.55 0.97 AFFX-R2-EC-BIOD 66331.8 P 87190.0 P 76760.91 1.31 AFFX-R2-P1-CRE 141314.5 P 177520.5 P 159417.52 1.26 AFFX-R2-BS-DAP 6.1 A 17.8 A 2.3 A 8.75 0.38 AFFX-R2-BS-LYS 3.0 A 72.7 A 107.5 A 61.06 35.91 AFFX-R2-BS-PHE 24.7 A 53.8 A 11.3 A 29.93 0.46 AFFX-R2-BS-THR 36.1 A 18.5 A 5.4 A 20.00 0.15 ______________________________________________________________________