Report Type: Expression Report Date: 12:43PM 11/08/2008 ______________________________________________________________________ Filename: Arabidopsis hMCE2.CHP Probe Array Type: ATH1-121501 Algorithm: Statistical Probe Pair Thr: 8 Controls: Antisense ______________________________________________________________________ Alpha1: 0.05 Alpha2: 0.065 Tau: 0.015 Noise (RawQ): 1.060 Scale Factor (SF): 12.697 TGT Value: 500 Norm Factor (NF): 1.000 ______________________________________________________________________ Background: Avg: 31.68 Std: 0.39 Min: 31.10 Max: 33.60 Noise: Avg: 0.94 Std: 0.06 Min: 0.80 Max: 1.20 Corner+ Avg: 66 Count: 32 Corner- Avg: 11011 Count: 32 Central- Avg: 8962 Count: 9 ______________________________________________________________________ The following data represents probe sets that exceed the probe pair threshold and are not called "No Call". Total Probe Sets: 22810 Number Present: 11418 50.1% Number Absent: 11092 48.6% Number Marginal: 300 1.3% Average Signal (P): 1474.2 Average Signal (A): 35.2 Average Signal (M): 121.6 Average Signal (All): 756.6 ______________________________________________________________________ Housekeeping Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-R2-AT-ACTIN 10189.5 P 2282.3 P 10856.1 P 7775.97 1.07 AFFX-R2-AT-GAPDH 2470.5 P 8192.3 P 5331.42 3.32 AFFX-R2-AT-UBQ 1891.2 P 16856.1 P 9373.66 8.91 AFFX-ATHAL-ACTIN 810.1 P 1120.4 P 7487.1 P 3139.18 9.24 AFFX-ATHAL-GAPDH 689.4 P 3234.4 P 13048.5 P 5657.43 18.93 AFFX-ATHAL-UBQ 1401.3 P 2026.5 P 13756.6 P 5728.12 9.82 ______________________________________________________________________ Spike Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-BIOB 5196.6 P 8996.8 P 7162.3 P 7118.55 1.38 AFFX-BIOC 17252.0 P 11129.1 P 14190.56 0.65 AFFX-BIOD 24432.3 P 42870.7 P 33651.46 1.75 AFFX-CRE 87605.9 P 111240.0 P 99422.97 1.27 AFFX-DAP 24.6 A 8.1 A 9.6 A 14.13 0.39 AFFX-LYS 50.0 A 7.6 A 9.6 A 22.38 0.19 AFFX-PHE 5.4 A 6.2 A 5.7 A 5.78 1.06 AFFX-THR 38.5 A 27.2 A 57.8 A 41.19 1.50 AFFX-TRP 15.5 A 7.4 A 21.0 A 14.66 1.36 AFFX-R2-EC-BIOB 7254.2 P 7733.0 P 7934.7 P 7640.64 1.09 AFFX-R2-EC-BIOC 20404.9 P 22136.4 P 21270.68 1.08 AFFX-R2-EC-BIOD 49844.9 P 53062.6 P 51453.77 1.06 AFFX-R2-P1-CRE 101047.6 P 129022.6 P 115035.14 1.28 AFFX-R2-BS-DAP 24.6 A 18.5 A 4.8 A 15.94 0.19 AFFX-R2-BS-LYS 12.5 A 2.0 A 44.2 A 19.57 3.53 AFFX-R2-BS-PHE 6.8 A 3.8 A 9.8 A 6.78 1.45 AFFX-R2-BS-THR 10.6 A 4.1 A 12.1 A 8.90 1.14 ______________________________________________________________________