Report Type: Expression Report Date: 04:12PM 11/25/2008 ______________________________________________________________________ Filename: Arabidopsis hEP-4.CHP Probe Array Type: ATH1-121501 Algorithm: Statistical Probe Pair Thr: 8 Controls: Antisense ______________________________________________________________________ Alpha1: 0.05 Alpha2: 0.065 Tau: 0.015 Noise (RawQ): 1.210 Scale Factor (SF): 6.957 TGT Value: 500 Norm Factor (NF): 1.000 ______________________________________________________________________ Background: Avg: 29.90 Std: 0.50 Min: 29.30 Max: 32.70 Noise: Avg: 1.22 Std: 0.07 Min: 1.10 Max: 1.60 Corner+ Avg: 119 Count: 32 Corner- Avg: 24999 Count: 32 Central- Avg: 23015 Count: 9 ______________________________________________________________________ The following data represents probe sets that exceed the probe pair threshold and are not called "No Call". Total Probe Sets: 22810 Number Present: 13583 59.5% Number Absent: 9028 39.6% Number Marginal: 199 0.9% Average Signal (P): 1237.3 Average Signal (A): 23.1 Average Signal (M): 86.6 Average Signal (All): 746.7 ______________________________________________________________________ Housekeeping Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-R2-AT-ACTIN 8481.7 P 2266.3 P 11101.7 P 7283.24 1.31 AFFX-R2-AT-GAPDH 6220.4 P 7935.6 P 7078.01 1.28 AFFX-R2-AT-UBQ 1978.6 P 10563.6 P 6271.14 5.34 AFFX-ATHAL-ACTIN 421.3 P 1577.8 P 5244.6 P 2414.56 12.45 AFFX-ATHAL-GAPDH 2447.4 P 5416.2 P 8704.6 P 5522.73 3.56 AFFX-ATHAL-UBQ 980.9 P 2048.8 P 9258.5 P 4096.09 9.44 ______________________________________________________________________ Spike Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-BIOB 4621.5 P 8776.8 P 6917.4 P 6771.91 1.50 AFFX-BIOC 13229.4 P 8396.3 P 10812.82 0.63 AFFX-BIOD 17828.5 P 41006.0 P 29417.26 2.30 AFFX-CRE 92080.3 P 106443.9 P 99262.13 1.16 AFFX-DAP 19.6 A 6.2 A 8.0 A 11.28 0.41 AFFX-LYS 4.9 A 31.6 A 4.0 A 13.52 0.82 AFFX-PHE 5.5 A 2.8 A 4.5 A 4.26 0.82 AFFX-THR 11.9 A 19.9 A 56.3 A 29.37 4.71 AFFX-TRP 25.4 A 26.2 A 10.9 A 20.84 0.43 AFFX-R2-EC-BIOB 7981.5 P 8282.1 P 8369.3 P 8210.95 1.05 AFFX-R2-EC-BIOC 17186.6 P 16755.4 P 16970.99 0.97 AFFX-R2-EC-BIOD 45362.7 P 52058.0 P 48710.33 1.15 AFFX-R2-P1-CRE 100753.3 P 117139.1 P 108946.19 1.16 AFFX-R2-BS-DAP 1.2 A 15.8 A 2.3 A 6.43 1.94 AFFX-R2-BS-LYS 30.0 A 13.1 A 19.0 A 20.72 0.63 AFFX-R2-BS-PHE 1.0 A 22.7 A 15.1 A 12.92 15.63 AFFX-R2-BS-THR 25.1 A 5.3 A 6.6 A 12.33 0.26 ______________________________________________________________________