Report Type: Expression Report Date: 04:12PM 11/25/2008 ______________________________________________________________________ Filename: Arabidopsis hEP-3.CHP Probe Array Type: ATH1-121501 Algorithm: Statistical Probe Pair Thr: 8 Controls: Antisense ______________________________________________________________________ Alpha1: 0.05 Alpha2: 0.065 Tau: 0.015 Noise (RawQ): 1.260 Scale Factor (SF): 6.162 TGT Value: 500 Norm Factor (NF): 1.000 ______________________________________________________________________ Background: Avg: 30.05 Std: 0.43 Min: 29.60 Max: 32.20 Noise: Avg: 1.18 Std: 0.07 Min: 1.10 Max: 1.60 Corner+ Avg: 105 Count: 32 Corner- Avg: 26436 Count: 32 Central- Avg: 23360 Count: 9 ______________________________________________________________________ The following data represents probe sets that exceed the probe pair threshold and are not called "No Call". Total Probe Sets: 22810 Number Present: 13706 60.1% Number Absent: 8859 38.8% Number Marginal: 245 1.1% Average Signal (P): 1192.8 Average Signal (A): 19.7 Average Signal (M): 80.4 Average Signal (All): 725.2 ______________________________________________________________________ Housekeeping Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-R2-AT-ACTIN 6138.1 P 1895.3 P 8739.5 P 5590.97 1.42 AFFX-R2-AT-GAPDH 2367.0 P 4446.0 P 3406.51 1.88 AFFX-R2-AT-UBQ 1047.4 P 7992.9 P 4520.15 7.63 AFFX-ATHAL-ACTIN 140.2 P 981.8 P 5721.2 P 2281.06 40.82 AFFX-ATHAL-GAPDH 784.0 P 2696.2 P 7576.7 P 3685.65 9.66 AFFX-ATHAL-UBQ 632.4 P 1771.2 P 6570.4 P 2991.30 10.39 ______________________________________________________________________ Spike Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-BIOB 4885.9 P 8701.9 P 7046.3 P 6878.05 1.44 AFFX-BIOC 13613.6 P 9094.3 P 11353.95 0.67 AFFX-BIOD 19520.1 P 38974.3 P 29247.21 2.00 AFFX-CRE 90445.3 P 98845.2 P 94645.25 1.09 AFFX-DAP 12.6 A 2.9 A 5.8 A 7.05 0.46 AFFX-LYS 5.6 A 1.8 A 1.2 A 2.88 0.21 AFFX-PHE 2.9 A 10.8 A 3.5 A 5.72 1.19 AFFX-THR 16.2 A 3.2 A 24.3 A 14.55 1.50 AFFX-TRP 2.3 A 12.2 A 28.3 A 14.23 12.38 AFFX-R2-EC-BIOB 8407.3 P 7689.3 P 7796.5 P 7964.40 0.93 AFFX-R2-EC-BIOC 17621.6 P 18111.5 P 17866.55 1.03 AFFX-R2-EC-BIOD 42901.3 P 47603.5 P 45252.44 1.11 AFFX-R2-P1-CRE 97211.6 P 108225.5 P 102718.58 1.11 AFFX-R2-BS-DAP 33.0 A 0.6 A 1.7 A 11.76 0.05 AFFX-R2-BS-LYS 12.1 A 1.4 A 33.7 A 15.73 2.78 AFFX-R2-BS-PHE 2.0 A 1.8 A 42.3 A 15.35 21.58 AFFX-R2-BS-THR 27.1 P 11.5 A 4.0 A 14.22 0.15 ______________________________________________________________________