Report Type: Expression Report Date: 07:11PM 11/25/2008 ______________________________________________________________________ Filename: Arabidopsis mgWS-3.CHP Probe Array Type: ATH1-121501 Algorithm: Statistical Probe Pair Thr: 8 Controls: Antisense ______________________________________________________________________ Alpha1: 0.05 Alpha2: 0.065 Tau: 0.015 Noise (RawQ): 1.260 Scale Factor (SF): 19.987 TGT Value: 500 Norm Factor (NF): 1.000 ______________________________________________________________________ Background: Avg: 31.06 Std: 0.53 Min: 30.30 Max: 33.70 Noise: Avg: 1.10 Std: 0.08 Min: 0.90 Max: 1.50 Corner+ Avg: 118 Count: 32 Corner- Avg: 20765 Count: 32 Central- Avg: 19816 Count: 9 ______________________________________________________________________ The following data represents probe sets that exceed the probe pair threshold and are not called "No Call". Total Probe Sets: 22810 Number Present: 11779 51.6% Number Absent: 10689 46.9% Number Marginal: 342 1.5% Average Signal (P): 1637.8 Average Signal (A): 66.1 Average Signal (M): 213.4 Average Signal (All): 880.0 ______________________________________________________________________ Housekeeping Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-R2-AT-ACTIN 14983.3 P 2571.6 P 12807.5 P 10120.83 0.85 AFFX-R2-AT-GAPDH 14042.8 P 15370.4 P 14706.62 1.09 AFFX-R2-AT-UBQ 3128.4 P 18727.8 P 10928.07 5.99 AFFX-ATHAL-ACTIN 460.2 P 1769.4 P 6736.6 P 2988.74 14.64 AFFX-ATHAL-GAPDH 7528.3 P 14329.0 P 21380.6 P 14412.63 2.84 AFFX-ATHAL-UBQ 2518.4 P 4245.5 P 13715.2 P 6826.38 5.45 ______________________________________________________________________ Spike Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-BIOB 7500.9 P 14776.1 P 13779.6 P 12018.88 1.84 AFFX-BIOC 22997.8 P 13775.3 P 18386.54 0.60 AFFX-BIOD 32169.4 P 72746.8 P 52458.09 2.26 AFFX-CRE 226909.5 P 285961.5 P 256435.50 1.26 AFFX-DAP 19.5 A 2.9 A 16.8 A 13.07 0.86 AFFX-LYS 14.3 A 66.7 A 77.5 A 52.85 5.41 AFFX-PHE 4.0 A 11.2 A 24.0 A 13.03 6.06 AFFX-THR 5.4 A 68.3 A 112.5 A 62.05 20.71 AFFX-TRP 54.5 A 4.2 A 51.6 A 36.77 0.95 AFFX-R2-EC-BIOB 10743.9 P 11927.7 P 12790.8 P 11820.82 1.19 AFFX-R2-EC-BIOC 32122.3 P 28656.4 P 30389.35 0.89 AFFX-R2-EC-BIOD 84370.0 P 97459.1 P 90914.50 1.16 AFFX-R2-P1-CRE 238651.9 P 281756.7 P 260204.33 1.18 AFFX-R2-BS-DAP 14.5 A 130.8 P 6.4 A 50.56 0.44 AFFX-R2-BS-LYS 43.3 A 23.9 A 80.5 A 49.23 1.86 AFFX-R2-BS-PHE 47.8 A 61.7 A 90.9 A 66.79 1.90 AFFX-R2-BS-THR 43.1 A 51.7 A 98.3 A 64.39 2.28 ______________________________________________________________________