Report Type:	Expression Report
Date:          	04:12PM 11/25/2008
______________________________________________________________________

Filename:		Arabidopsis mgGSC-3.CHP
Probe Array Type:	ATH1-121501
Algorithm:		Statistical
Probe Pair Thr:	8
Controls:		Antisense
______________________________________________________________________

Alpha1:		0.05
Alpha2:		0.065
Tau:		0.015
Noise (RawQ):	1.270
Scale Factor (SF):	34.486
TGT Value:		500
Norm Factor (NF):	1.000
______________________________________________________________________

Background:
	Avg: 30.58	Std: 0.23	Min: 30.10	Max: 31.40
Noise:
	Avg: 1.12	Std: 0.05	Min: 1.00	Max: 1.30
Corner+
	Avg: 109		Count: 32
Corner-
	Avg: 19331		Count: 32
Central-
	Avg: 18261		Count: 9
______________________________________________________________________

The following data represents probe sets that exceed the probe pair threshold 
and are not called "No Call".

Total Probe Sets:	22810
Number Present:	9059	39.7%
Number Absent:	13381	58.7%
Number Marginal:	370	1.6%

Average Signal (P):	2066.8
Average Signal (A):	107.8
Average Signal (M):	345.8
Average Signal (All):	889.7
______________________________________________________________________

Housekeeping Controls:
Probe Set		Sig(5')	Det(5')	Sig(M')	Det(M')	Sig(3')	Det(3')	Sig(all)	Sig(3'/5')
AFFX-R2-AT-ACTIN	18686.4	P	1463.4	P	6122.0	P	8757.26	0.33
AFFX-R2-AT-GAPDH	4713.3	P	 	 	4180.1	P	4446.68	0.89
AFFX-R2-AT-UBQ	5785.1	P	 	 	26876.9	P	16330.96	4.65
AFFX-ATHAL-ACTIN	1127.4	P	1007.1	P	4654.9	P	2263.14	4.13
AFFX-ATHAL-GAPDH	2129.7	P	3715.3	P	9694.1	P	5179.68	4.55
AFFX-ATHAL-UBQ	3175.4	P	7003.7	P	20242.1	P	10140.38	6.37
______________________________________________________________________

Spike Controls:
Probe Set		Sig(5')	Det(5')	Sig(M')	Det(M')	Sig(3')	Det(3')	Sig(all)	Sig(3'/5')
AFFX-BIOB		15761.5	P	27332.8	P	22377.7	P	21823.99	1.42
AFFX-BIOC		43351.8	P	 	 	25205.9	P	34278.85	0.58
AFFX-BIOD		60245.7	P	 	 	123215.4	P	91730.56	2.05
AFFX-CRE		349144.5	P	 	 	414088.8	P	381616.66	1.19
AFFX-DAP		119.0	A	106.6	A	159.6	A	128.41	1.34
AFFX-LYS		42.7	A	169.0	A	9.0	A	73.57	0.21
AFFX-PHE		35.3	A	8.8	A	115.3	A	53.13	3.26
AFFX-THR		9.2	A	6.9	A	29.5	A	15.24	3.20
AFFX-TRP		14.8	A	51.2	A	90.6	A	52.22	6.14
AFFX-R2-EC-BIOB	22275.0	P	22300.5	P	24087.2	P	22887.60	1.08
AFFX-R2-EC-BIOC	56480.7	P	 	 	54964.8	P	55722.74	0.97
AFFX-R2-EC-BIOD	138787.3	P	 	 	173333.4	P	156060.34	1.25
AFFX-R2-P1-CRE	418975.2	P	 	 	463354.2	P	441164.69	1.11
AFFX-R2-BS-DAP	13.8	A	112.2	A	5.4	A	43.80	0.39
AFFX-R2-BS-LYS	103.1	A	12.7	A	8.1	A	41.29	0.08
AFFX-R2-BS-PHE	119.2	A	11.5	A	557.1	A	229.25	4.67
AFFX-R2-BS-THR	150.5	A	81.1	A	182.6	A	138.09	1.21
______________________________________________________________________

