Report Type: Expression Report Date: 07:00PM 12/02/2008 ______________________________________________________________________ Filename: Arabidopsis mgMCE-2.CHP Probe Array Type: ATH1-121501 Algorithm: Statistical Probe Pair Thr: 8 Controls: Antisense ______________________________________________________________________ Alpha1: 0.05 Alpha2: 0.065 Tau: 0.015 Noise (RawQ): 1.230 Scale Factor (SF): 14.932 TGT Value: 500 Norm Factor (NF): 1.000 ______________________________________________________________________ Background: Avg: 31.76 Std: 0.28 Min: 31.10 Max: 32.70 Noise: Avg: 1.16 Std: 0.04 Min: 1.00 Max: 1.30 Corner+ Avg: 113 Count: 32 Corner- Avg: 21597 Count: 32 Central- Avg: 20925 Count: 9 ______________________________________________________________________ The following data represents probe sets that exceed the probe pair threshold and are not called "No Call". Total Probe Sets: 22810 Number Present: 11370 49.8% Number Absent: 11112 48.7% Number Marginal: 328 1.4% Average Signal (P): 1668.8 Average Signal (A): 51.8 Average Signal (M): 180.0 Average Signal (All): 859.6 ______________________________________________________________________ Housekeeping Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-R2-AT-ACTIN 12010.7 P 2170.7 P 9736.0 P 7972.47 0.81 AFFX-R2-AT-GAPDH 8576.4 P 9534.2 P 9055.30 1.11 AFFX-R2-AT-UBQ 4141.4 P 25166.2 P 14653.76 6.08 AFFX-ATHAL-ACTIN 456.7 P 1791.2 P 7274.9 P 3174.26 15.93 AFFX-ATHAL-GAPDH 3141.8 P 8946.2 P 16596.5 P 9561.49 5.28 AFFX-ATHAL-UBQ 2360.6 P 4327.8 P 21098.8 P 9262.41 8.94 ______________________________________________________________________ Spike Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-BIOB 7252.0 P 13207.4 P 10167.2 P 10208.85 1.40 AFFX-BIOC 19259.1 P 11742.0 P 15500.58 0.61 AFFX-BIOD 26179.2 P 61317.7 P 43748.45 2.34 AFFX-CRE 147443.0 P 182089.5 P 164766.27 1.23 AFFX-DAP 10.1 A 8.6 A 5.6 A 8.09 0.55 AFFX-LYS 26.5 A 47.3 A 5.8 A 26.56 0.22 AFFX-PHE 4.5 A 57.9 A 15.6 A 25.98 3.47 AFFX-THR 32.2 A 6.7 A 100.7 A 46.52 3.13 AFFX-TRP 10.6 A 6.0 A 42.3 A 19.64 4.00 AFFX-R2-EC-BIOB 11846.0 P 10555.9 P 11673.4 P 11358.43 0.99 AFFX-R2-EC-BIOC 26362.1 P 25887.8 P 26124.95 0.98 AFFX-R2-EC-BIOD 66610.4 P 82191.2 P 74400.80 1.23 AFFX-R2-P1-CRE 181694.3 P 201038.1 P 191366.19 1.11 AFFX-R2-BS-DAP 7.7 A 83.9 A 84.1 A 58.59 10.88 AFFX-R2-BS-LYS 60.2 P 2.4 A 34.8 A 32.46 0.58 AFFX-R2-BS-PHE 30.5 A 6.9 A 64.9 A 34.10 2.13 AFFX-R2-BS-THR 70.0 A 6.4 A 53.6 A 43.33 0.77 ______________________________________________________________________