Report Type: Expression Report Date: 05:20PM 06/04/2008 ______________________________________________________________________ Filename: Arabidopsis pgGSC1.CHP Probe Array Type: ATH1-121501 Algorithm: Statistical Probe Pair Thr: 8 Controls: Antisense ______________________________________________________________________ Alpha1: 0.05 Alpha2: 0.065 Tau: 0.015 Noise (RawQ): 1.210 Scale Factor (SF): 17.984 TGT Value: 500 Norm Factor (NF): 1.000 ______________________________________________________________________ Background: Avg: 31.38 Std: 0.27 Min: 30.80 Max: 32.20 Noise: Avg: 1.07 Std: 0.03 Min: 1.00 Max: 1.20 Corner+ Avg: 210 Count: 32 Corner- Avg: 16812 Count: 32 Central- Avg: 14861 Count: 9 ______________________________________________________________________ The following data represents probe sets that exceed the probe pair threshold and are not called "No Call". Total Probe Sets: 22810 Number Present: 11243 49.3% Number Absent: 11236 49.3% Number Marginal: 331 1.5% Average Signal (P): 1557.9 Average Signal (A): 55.0 Average Signal (M): 173.4 Average Signal (All): 797.5 ______________________________________________________________________ Housekeeping Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-R2-AT-ACTIN 11983.0 P 1295.9 P 11393.9 P 8224.27 0.95 AFFX-R2-AT-GAPDH 4305.9 P 8267.1 P 6286.49 1.92 AFFX-R2-AT-UBQ 2679.4 P 21533.6 P 12106.51 8.04 AFFX-ATHAL-ACTIN 443.1 P 705.0 P 8344.4 P 3164.13 18.83 AFFX-ATHAL-GAPDH 1271.1 P 5824.4 P 16968.6 P 8021.35 13.35 AFFX-ATHAL-UBQ 1837.4 P 4414.6 P 18677.0 P 8309.64 10.17 ______________________________________________________________________ Spike Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-BIOB 8222.6 P 15554.1 P 11751.7 P 11842.80 1.43 AFFX-BIOC 26798.0 P 14253.9 P 20525.95 0.53 AFFX-BIOD 36042.5 P 78146.8 P 57094.66 2.17 AFFX-CRE 151897.0 P 194301.9 P 173099.45 1.28 AFFX-DAP 70.0 A 72.6 A 19.2 A 53.93 0.27 AFFX-LYS 100.8 P 7.1 A 6.3 A 38.06 0.06 AFFX-PHE 6.4 A 3.3 A 21.9 A 10.54 3.45 AFFX-THR 72.5 A 6.2 A 37.6 A 38.76 0.52 AFFX-TRP 54.1 A 9.8 A 5.5 A 23.13 0.10 AFFX-R2-EC-BIOB 11225.0 P 10732.9 P 13146.2 P 11701.35 1.17 AFFX-R2-EC-BIOC 36196.3 P 37929.1 P 37062.70 1.05 AFFX-R2-EC-BIOD 68209.8 P 83973.6 P 76091.71 1.23 AFFX-R2-P1-CRE 177936.2 P 185299.7 P 181617.97 1.04 AFFX-R2-BS-DAP 5.1 A 5.6 A 4.4 A 5.07 0.86 AFFX-R2-BS-LYS 11.0 A 6.4 A 26.5 A 14.61 2.41 AFFX-R2-BS-PHE 63.6 A 28.2 A 3.2 A 31.70 0.05 AFFX-R2-BS-THR 33.3 A 5.3 A 34.6 A 24.43 1.04 ______________________________________________________________________