Report Type: Expression Report Date: 05:17PM 02/14/2008 ______________________________________________________________________ Filename: Arabidopsis lcGSC2.CHP Probe Array Type: ATH1-121501 Algorithm: Statistical Probe Pair Thr: 8 Controls: Antisense ______________________________________________________________________ Alpha1: 0.05 Alpha2: 0.065 Tau: 0.015 Noise (RawQ): 0.990 Scale Factor (SF): 14.338 TGT Value: 500 Norm Factor (NF): 1.000 ______________________________________________________________________ Background: Avg: 29.12 Std: 0.39 Min: 28.40 Max: 30.20 Noise: Avg: 1.01 Std: 0.02 Min: 0.90 Max: 1.10 Corner+ Avg: 46 Count: 32 Corner- Avg: 13019 Count: 32 Central- Avg: 10443 Count: 9 ______________________________________________________________________ The following data represents probe sets that exceed the probe pair threshold and are not called "No Call". Total Probe Sets: 22810 Number Present: 12130 53.2% Number Absent: 10362 45.4% Number Marginal: 318 1.4% Average Signal (P): 1413.0 Average Signal (A): 44.2 Average Signal (M): 143.7 Average Signal (All): 773.5 ______________________________________________________________________ Housekeeping Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-R2-AT-ACTIN 11592.5 P 2339.0 P 14244.1 P 9391.86 1.23 AFFX-R2-AT-GAPDH 6641.9 P 8740.6 P 7691.25 1.32 AFFX-R2-AT-UBQ 3076.2 P 18932.6 P 11004.38 6.15 AFFX-ATHAL-ACTIN 546.6 P 1481.9 P 5773.2 P 2600.59 10.56 AFFX-ATHAL-GAPDH 2105.2 P 6819.9 P 11214.6 P 6713.21 5.33 AFFX-ATHAL-UBQ 1759.0 P 4087.8 P 17810.7 P 7885.82 10.13 ______________________________________________________________________ Spike Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-BIOB 5350.2 P 8673.8 P 6935.0 P 6986.33 1.30 AFFX-BIOC 16949.7 P 9831.5 P 13390.63 0.58 AFFX-BIOD 23197.5 P 49547.6 P 36372.52 2.14 AFFX-CRE 100864.0 P 134628.7 P 117746.31 1.33 AFFX-DAP 9.6 A 3.4 A 57.6 A 23.51 6.03 AFFX-LYS 43.2 A 8.9 A 8.9 A 20.34 0.21 AFFX-PHE 8.5 A 2.4 A 20.5 A 10.46 2.42 AFFX-THR 26.8 A 24.0 A 104.6 M 51.79 3.90 AFFX-TRP 32.3 A 2.8 A 94.9 A 43.35 2.93 AFFX-R2-EC-BIOB 7971.7 P 8349.7 P 8321.6 P 8214.35 1.04 AFFX-R2-EC-BIOC 23705.9 P 23366.9 P 23536.38 0.99 AFFX-R2-EC-BIOD 43814.2 P 64079.2 P 53946.70 1.46 AFFX-R2-P1-CRE 128323.0 P 140395.1 P 134359.06 1.09 AFFX-R2-BS-DAP 28.8 A 28.5 A 3.8 A 20.38 0.13 AFFX-R2-BS-LYS 9.3 A 35.5 A 121.5 P 55.42 13.10 AFFX-R2-BS-PHE 8.0 A 2.8 A 4.1 A 4.98 0.52 AFFX-R2-BS-THR 33.8 A 3.3 A 8.9 A 15.34 0.26 ______________________________________________________________________