Report Type: Expression Report Date: 10:16AM 04/22/2007 ______________________________________________________________________ Filename: Arabidopsis CE2.CHP Probe Array Type: ATH1-121501 Algorithm: Statistical Probe Pair Thr: 8 Controls: Antisense ______________________________________________________________________ Alpha1: 0.05 Alpha2: 0.065 Tau: 0.015 Noise (RawQ): 0.890 Scale Factor (SF): 41.528 TGT Value: 500 Norm Factor (NF): 1.000 ______________________________________________________________________ Background: Avg: 28.28 Std: 0.19 Min: 27.80 Max: 29.00 Noise: Avg: 0.74 Std: 0.03 Min: 0.60 Max: 0.80 Corner+ Avg: 179 Count: 32 Corner- Avg: 12429 Count: 32 Central- Avg: 9759 Count: 9 ______________________________________________________________________ The following data represents probe sets that exceed the probe pair threshold and are not called "No Call". Total Probe Sets: 22810 Number Present: 7036 30.8% Number Absent: 15472 67.8% Number Marginal: 302 1.3% Average Signal (P): 3233.6 Average Signal (A): 79.9 Average Signal (M): 316.5 Average Signal (All): 1055.8 ______________________________________________________________________ Housekeeping Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-R2-AT-ACTIN 5096.3 P 26.2 A 2701.2 P 2607.92 0.53 AFFX-R2-AT-GAPDH 1717.2 P 2816.9 P 2267.06 1.64 AFFX-R2-AT-UBQ 6302.7 P 23070.7 P 14686.70 3.66 AFFX-ATHAL-ACTIN 317.2 P 12.3 A 1758.5 P 696.00 5.54 AFFX-ATHAL-GAPDH 606.0 P 1480.0 P 9744.5 P 3943.49 16.08 AFFX-ATHAL-UBQ 2952.9 P 3172.3 P 27033.0 P 11052.74 9.15 ______________________________________________________________________ Spike Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-BIOB 17997.2 P 31038.6 P 22667.7 P 23901.20 1.26 AFFX-BIOC 54173.6 P 33206.8 P 43690.23 0.61 AFFX-BIOD 86804.8 P 166631.0 P 126717.92 1.92 AFFX-CRE 302530.8 P 435254.0 P 368892.44 1.44 AFFX-DAP 16.7 A 135.9 A 121.9 A 91.51 7.28 AFFX-LYS 11.2 A 22.4 A 16.7 A 16.76 1.50 AFFX-PHE 9.1 A 48.2 A 32.1 A 29.78 3.54 AFFX-THR 95.1 A 9.9 A 11.1 A 38.69 0.12 AFFX-TRP 4.9 A 35.7 A 76.5 A 39.04 15.66 AFFX-R2-EC-BIOB 24006.1 P 28831.8 P 25523.4 P 26120.46 1.06 AFFX-R2-EC-BIOC 77442.5 P 63299.1 P 70370.79 0.82 AFFX-R2-EC-BIOD 186032.1 P 195611.6 P 190821.84 1.05 AFFX-R2-P1-CRE 350833.2 P 333118.5 P 341975.81 0.95 AFFX-R2-BS-DAP 19.4 A 91.0 A 33.5 A 47.96 1.73 AFFX-R2-BS-LYS 27.9 A 110.7 A 103.4 A 80.68 3.70 AFFX-R2-BS-PHE 93.4 A 45.8 A 20.8 A 53.33 0.22 AFFX-R2-BS-THR 86.3 A 25.1 A 15.5 A 42.30 0.18 ______________________________________________________________________