Report Type: Expression Report Date: 03:30PM 02/21/2008 ______________________________________________________________________ Filename: Arabidopsis GMPE2.CHP Probe Array Type: ATH1-121501 Algorithm: Statistical Probe Pair Thr: 8 Controls: Antisense ______________________________________________________________________ Alpha1: 0.05 Alpha2: 0.065 Tau: 0.015 Noise (RawQ): 0.880 Scale Factor (SF): 16.977 TGT Value: 500 Norm Factor (NF): 1.000 ______________________________________________________________________ Background: Avg: 26.93 Std: 0.28 Min: 26.40 Max: 27.80 Noise: Avg: 0.88 Std: 0.03 Min: 0.80 Max: 1.00 Corner+ Avg: 44 Count: 32 Corner- Avg: 15601 Count: 32 Central- Avg: 13988 Count: 9 ______________________________________________________________________ The following data represents probe sets that exceed the probe pair threshold and are not called "No Call". Total Probe Sets: 22810 Number Present: 10694 46.9% Number Absent: 11792 51.7% Number Marginal: 324 1.4% Average Signal (P): 1747.3 Average Signal (A): 42.5 Average Signal (M): 149.8 Average Signal (All): 843.3 ______________________________________________________________________ Housekeeping Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-R2-AT-ACTIN 6011.8 P 1221.3 P 6719.5 P 4650.88 1.12 AFFX-R2-AT-GAPDH 3053.8 P 4531.6 P 3792.69 1.48 AFFX-R2-AT-UBQ 3367.7 P 18404.5 P 10886.09 5.46 AFFX-ATHAL-ACTIN 113.5 P 547.3 P 3129.9 P 1263.56 27.58 AFFX-ATHAL-GAPDH 924.6 P 3000.4 P 10056.4 P 4660.47 10.88 AFFX-ATHAL-UBQ 1696.7 P 4120.3 P 18117.8 P 7978.25 10.68 ______________________________________________________________________ Spike Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-BIOB 4684.8 P 10464.6 P 9518.4 P 8222.58 2.03 AFFX-BIOC 18705.5 P 13093.4 P 15899.48 0.70 AFFX-BIOD 27120.0 P 55910.0 P 41514.98 2.06 AFFX-CRE 125439.6 P 206086.6 P 165763.09 1.64 AFFX-DAP 49.7 A 7.4 A 27.8 A 28.29 0.56 AFFX-LYS 72.6 A 38.3 A 11.6 A 40.85 0.16 AFFX-PHE 13.3 A 5.4 A 6.7 A 8.44 0.50 AFFX-THR 18.0 A 36.9 A 80.7 A 45.18 4.49 AFFX-TRP 142.8 P 5.3 A 4.5 A 50.87 0.03 AFFX-R2-EC-BIOB 7642.8 P 9880.4 P 8460.4 P 8661.21 1.11 AFFX-R2-EC-BIOC 22700.0 P 20227.5 P 21463.79 0.89 AFFX-R2-EC-BIOD 68139.3 P 83138.4 P 75638.84 1.22 AFFX-R2-P1-CRE 150030.9 P 171662.5 P 160846.72 1.14 AFFX-R2-BS-DAP 3.7 A 46.2 A 9.6 A 19.82 2.57 AFFX-R2-BS-LYS 8.5 A 7.3 A 41.9 A 19.20 4.95 AFFX-R2-BS-PHE 29.2 A 4.5 A 3.0 A 12.22 0.10 AFFX-R2-BS-THR 62.6 A 4.3 A 42.5 A 36.45 0.68 ______________________________________________________________________