Report Type: Expression Report Date: 10:16AM 04/22/2007 ______________________________________________________________________ Filename: Arabidopsis EP6.CHP Probe Array Type: ATH1-121501 Algorithm: Statistical Probe Pair Thr: 8 Controls: Antisense ______________________________________________________________________ Alpha1: 0.05 Alpha2: 0.065 Tau: 0.015 Noise (RawQ): 0.860 Scale Factor (SF): 20.173 TGT Value: 500 Norm Factor (NF): 1.000 ______________________________________________________________________ Background: Avg: 30.32 Std: 0.25 Min: 29.50 Max: 30.90 Noise: Avg: 0.77 Std: 0.04 Min: 0.70 Max: 0.90 Corner+ Avg: 101 Count: 32 Corner- Avg: 6857 Count: 32 Central- Avg: 5538 Count: 9 ______________________________________________________________________ The following data represents probe sets that exceed the probe pair threshold and are not called "No Call". Total Probe Sets: 22810 Number Present: 10711 47.0% Number Absent: 11739 51.5% Number Marginal: 360 1.6% Average Signal (P): 1771.0 Average Signal (A): 46.6 Average Signal (M): 160.4 Average Signal (All): 858.2 ______________________________________________________________________ Housekeeping Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-R2-AT-ACTIN 12328.5 P 890.4 P 14305.0 P 9174.60 1.16 AFFX-R2-AT-GAPDH 3052.2 P 6265.1 P 4658.65 2.05 AFFX-R2-AT-UBQ 1133.3 P 14520.5 P 7826.91 12.81 AFFX-ATHAL-ACTIN 427.2 P 487.1 P 7587.0 P 2833.76 17.76 AFFX-ATHAL-GAPDH 1036.5 P 2704.8 P 17095.0 P 6945.41 16.49 AFFX-ATHAL-UBQ 1001.8 P 1205.4 P 8250.6 P 3485.95 8.24 ______________________________________________________________________ Spike Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-BIOB 5860.6 P 11674.5 P 8318.1 P 8617.76 1.42 AFFX-BIOC 19701.8 P 11172.7 P 15437.26 0.57 AFFX-BIOD 32128.5 P 59678.3 P 45903.43 1.86 AFFX-CRE 116511.1 P 166608.9 P 141559.98 1.43 AFFX-DAP 50.0 A 9.1 A 63.0 A 40.72 1.26 AFFX-LYS 1.6 A 39.0 A 6.1 A 15.57 3.85 AFFX-PHE 38.4 A 6.5 A 10.1 A 18.37 0.26 AFFX-THR 5.3 A 1.9 A 68.1 A 25.13 12.77 AFFX-TRP 90.2 A 47.8 A 32.3 A 56.77 0.36 AFFX-R2-EC-BIOB 9087.1 P 11060.9 P 9313.0 P 9820.34 1.02 AFFX-R2-EC-BIOC 27518.7 P 24166.4 P 25842.56 0.88 AFFX-R2-EC-BIOD 54421.4 P 67222.5 P 60821.93 1.24 AFFX-R2-P1-CRE 143575.5 P 166239.9 P 154907.69 1.16 AFFX-R2-BS-DAP 7.5 A 33.2 A 2.8 A 14.51 0.38 AFFX-R2-BS-LYS 3.7 A 26.2 A 105.6 P 45.16 28.75 AFFX-R2-BS-PHE 1.3 A 1.6 A 10.5 A 4.46 7.85 AFFX-R2-BS-THR 30.1 A 3.8 A 26.4 A 20.10 0.88 ______________________________________________________________________