Report Type: Expression Report Date: 04:14PM 02/27/2008 ______________________________________________________________________ Filename: Arabidopsis GPE2.CHP Probe Array Type: ATH1-121501 Algorithm: Statistical Probe Pair Thr: 8 Controls: Antisense ______________________________________________________________________ Alpha1: 0.05 Alpha2: 0.065 Tau: 0.015 Noise (RawQ): 1.030 Scale Factor (SF): 11.606 TGT Value: 500 Norm Factor (NF): 1.000 ______________________________________________________________________ Background: Avg: 29.56 Std: 0.37 Min: 28.80 Max: 30.70 Noise: Avg: 1.09 Std: 0.05 Min: 1.00 Max: 1.30 Corner+ Avg: 296 Count: 32 Corner- Avg: 19219 Count: 32 Central- Avg: 16099 Count: 9 ______________________________________________________________________ The following data represents probe sets that exceed the probe pair threshold and are not called "No Call". Total Probe Sets: 22810 Number Present: 11482 50.3% Number Absent: 11038 48.4% Number Marginal: 290 1.3% Average Signal (P): 1570.8 Average Signal (A): 36.5 Average Signal (M): 128.8 Average Signal (All): 810.0 ______________________________________________________________________ Housekeeping Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-R2-AT-ACTIN 11721.2 P 1078.3 P 4126.1 P 5641.90 0.35 AFFX-R2-AT-GAPDH 8363.9 P 7466.3 P 7915.13 0.89 AFFX-R2-AT-UBQ 2183.9 P 10506.9 P 6345.40 4.81 AFFX-ATHAL-ACTIN 282.3 P 500.6 P 3979.2 P 1587.35 14.09 AFFX-ATHAL-GAPDH 2828.0 P 5906.7 P 18014.2 P 8916.29 6.37 AFFX-ATHAL-UBQ 1462.7 P 3729.9 P 7630.9 P 4274.51 5.22 ______________________________________________________________________ Spike Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-BIOB 4230.2 P 8256.7 P 7788.6 P 6758.52 1.84 AFFX-BIOC 12906.2 P 8721.4 P 10813.78 0.68 AFFX-BIOD 21740.5 P 43650.1 P 32695.26 2.01 AFFX-CRE 86000.4 P 130104.0 P 108052.19 1.51 AFFX-DAP 37.9 A 6.4 A 13.6 A 19.33 0.36 AFFX-LYS 7.1 A 9.3 A 7.0 A 7.81 0.99 AFFX-PHE 3.2 A 3.4 A 30.7 A 12.43 9.58 AFFX-THR 22.1 A 14.2 A 17.2 A 17.81 0.78 AFFX-TRP 12.6 A 4.0 A 7.3 A 7.97 0.58 AFFX-R2-EC-BIOB 7705.4 P 8479.9 P 7845.1 P 8010.13 1.02 AFFX-R2-EC-BIOC 18958.5 P 16031.1 P 17494.82 0.85 AFFX-R2-EC-BIOD 53789.7 P 66974.1 P 60381.91 1.25 AFFX-R2-P1-CRE 108992.8 P 120587.0 P 114789.90 1.11 AFFX-R2-BS-DAP 5.3 A 2.2 A 11.8 A 6.46 2.22 AFFX-R2-BS-LYS 21.0 A 3.3 A 38.9 P 21.07 1.85 AFFX-R2-BS-PHE 19.8 A 45.1 A 49.2 A 38.04 2.48 AFFX-R2-BS-THR 7.6 A 12.9 A 2.9 A 7.80 0.39 ______________________________________________________________________