Report Type: Expression Report Date: 01:43PM 10/12/2007 ______________________________________________________________________ Filename: Arabidopsis GGSc1.CHP Probe Array Type: ATH1-121501 Algorithm: Statistical Probe Pair Thr: 8 Controls: Antisense ______________________________________________________________________ Alpha1: 0.05 Alpha2: 0.065 Tau: 0.015 Noise (RawQ): 1.000 Scale Factor (SF): 24.770 TGT Value: 500 Norm Factor (NF): 1.000 ______________________________________________________________________ Background: Avg: 29.14 Std: 0.08 Min: 28.90 Max: 29.40 Noise: Avg: 0.86 Std: 0.02 Min: 0.80 Max: 0.90 Corner+ Avg: 152 Count: 32 Corner- Avg: 10240 Count: 32 Central- Avg: 8265 Count: 9 ______________________________________________________________________ The following data represents probe sets that exceed the probe pair threshold and are not called "No Call". Total Probe Sets: 22810 Number Present: 11439 50.1% Number Absent: 10993 48.2% Number Marginal: 378 1.7% Average Signal (P): 1549.4 Average Signal (A): 63.5 Average Signal (M): 215.7 Average Signal (All): 811.2 ______________________________________________________________________ Housekeeping Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-R2-AT-ACTIN 16302.5 P 2015.3 P 5756.8 P 8024.86 0.35 AFFX-R2-AT-GAPDH 8381.5 P 8962.1 P 8671.81 1.07 AFFX-R2-AT-UBQ 4274.3 P 13119.6 P 8696.94 3.07 AFFX-ATHAL-ACTIN 335.7 P 665.9 P 3377.6 P 1459.70 10.06 AFFX-ATHAL-GAPDH 2777.3 P 5767.7 P 16282.9 P 8275.99 5.86 AFFX-ATHAL-UBQ 2393.3 P 3928.0 P 11933.3 P 6084.90 4.99 ______________________________________________________________________ Spike Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-BIOB 11340.3 P 19083.0 P 15871.8 P 15431.68 1.40 AFFX-BIOC 36032.6 P 22113.0 P 29072.79 0.61 AFFX-BIOD 56000.2 P 95456.8 P 75728.47 1.70 AFFX-CRE 211112.1 P 296828.5 P 253970.28 1.41 AFFX-DAP 60.1 A 13.1 A 7.7 A 26.96 0.13 AFFX-LYS 11.0 A 7.8 A 4.3 A 7.68 0.39 AFFX-PHE 105.2 P 5.1 A 23.8 A 44.70 0.23 AFFX-THR 42.0 A 55.4 A 108.7 A 68.69 2.59 AFFX-TRP 16.1 A 27.5 A 21.8 A 21.78 1.35 AFFX-R2-EC-BIOB 15606.8 P 18822.0 P 14892.6 P 16440.48 0.95 AFFX-R2-EC-BIOC 39366.9 P 43254.6 P 41310.79 1.10 AFFX-R2-EC-BIOD 110341.5 P 126101.8 P 118221.67 1.14 AFFX-R2-P1-CRE 251829.4 P 254025.3 P 252927.36 1.01 AFFX-R2-BS-DAP 46.9 A 29.2 A 4.2 A 26.75 0.09 AFFX-R2-BS-LYS 5.3 A 10.2 A 3.4 A 6.31 0.64 AFFX-R2-BS-PHE 39.2 A 4.5 A 80.6 A 41.44 2.06 AFFX-R2-BS-THR 17.5 A 8.2 A 8.8 A 11.52 0.50 ______________________________________________________________________