Report Type: Expression Report Date: 06:47PM 04/26/2007 ______________________________________________________________________ Filename: Soybean EM Whole Seed2.CHP Probe Array Type: Soybean Algorithm: Statistical Probe Pair Thr: 8 Controls: Antisense ______________________________________________________________________ Alpha1: 0.05 Alpha2: 0.065 Tau: 0.015 Noise (RawQ): 2.480 Scale Factor (SF): 2.681 TGT Value: 500 Norm Factor (NF): 1.000 ______________________________________________________________________ Background: Avg: 84.45 Std: 3.82 Min: 73.70 Max: 93.30 Noise: Avg: 4.53 Std: 0.34 Min: 3.80 Max: 5.50 Corner+ Avg: 548 Count: 32 Corner- Avg: 17427 Count: 32 Central- Avg: 19628 Count: 9 ______________________________________________________________________ The following data represents probe sets that exceed the probe pair threshold and are not called "No Call". Total Probe Sets: 61078 Number Present: 21951 35.9% Number Absent: 38367 62.8% Number Marginal: 760 1.2% Average Signal (P): 2120.0 Average Signal (A): 50.9 Average Signal (M): 166.0 Average Signal (All): 795.9 ______________________________________________________________________ Spike Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-BIOB 307.0 P 689.0 P 368.5 P 454.84 1.20 AFFX-BIOC 1271.4 P 1092.8 P 1182.09 0.86 AFFX-BIOD 2267.7 P 5814.4 P 4041.07 2.56 AFFX-CRE 17200.6 P 19122.5 P 18161.58 1.11 AFFX-DAP 35.1 A 17.3 A 8.3 A 20.22 0.24 AFFX-LYS 15.0 A 11.2 A 10.3 A 12.17 0.69 AFFX-PHE 9.0 A 6.2 A 35.6 A 16.97 3.95 AFFX-THR 8.7 A 10.1 A 54.3 A 24.36 6.23 AFFX-TRP 63.4 A 28.3 A 6.1 A 32.61 0.10 AFFX-R2-EC-BIOB 711.0 P 773.2 P 609.3 P 697.86 0.86 AFFX-R2-EC-BIOC 1713.5 P 1927.9 P 1820.73 1.13 AFFX-R2-EC-BIOD 7128.4 P 9081.1 P 8104.76 1.27 AFFX-R2-P1-CRE 21022.8 P 27164.2 P 24093.50 1.29 AFFX-R2-BS-DAP 3.8 A 20.2 A 3.0 A 8.99 0.78 AFFX-R2-BS-LYS 3.8 A 21.3 A 56.6 A 27.23 14.91 AFFX-R2-BS-PHE 55.7 A 16.1 A 81.5 A 51.09 1.46 AFFX-R2-BS-THR 7.9 A 11.2 A 23.5 A 14.18 3.00 ______________________________________________________________________