Report Type: Expression Report Date: 12:50PM 05/16/2007 ______________________________________________________________________ Filename: Soybean EM SeedCoatHourglass1.CHP Probe Array Type: Soybean Algorithm: Statistical Probe Pair Thr: 8 Controls: Antisense ______________________________________________________________________ Alpha1: 0.05 Alpha2: 0.065 Tau: 0.015 Noise (RawQ): 1.870 Scale Factor (SF): 8.221 TGT Value: 500 Norm Factor (NF): 1.000 ______________________________________________________________________ Background: Avg: 60.97 Std: 0.64 Min: 58.80 Max: 62.10 Noise: Avg: 2.80 Std: 0.06 Min: 2.60 Max: 3.00 Corner+ Avg: 584 Count: 32 Corner- Avg: 18634 Count: 32 Central- Avg: 17928 Count: 9 ______________________________________________________________________ The following data represents probe sets that exceed the probe pair threshold and are not called "No Call". Total Probe Sets: 61078 Number Present: 16944 27.7% Number Absent: 43362 71.0% Number Marginal: 772 1.3% Average Signal (P): 3385.8 Average Signal (A): 71.4 Average Signal (M): 261.7 Average Signal (All): 993.3 ______________________________________________________________________ Spike Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-BIOB 1543.2 P 2454.9 P 1630.9 P 1876.34 1.06 AFFX-BIOC 4786.9 P 4598.4 P 4692.63 0.96 AFFX-BIOD 9573.7 P 19670.7 P 14622.24 2.05 AFFX-CRE 51046.2 P 60481.2 P 55763.69 1.18 AFFX-DAP 43.6 A 27.1 A 5.5 A 25.44 0.13 AFFX-LYS 80.9 A 14.5 A 8.7 A 34.68 0.11 AFFX-PHE 4.6 A 5.7 A 27.7 A 12.66 6.07 AFFX-THR 16.4 A 25.2 A 52.5 A 31.35 3.19 AFFX-TRP 38.7 A 66.3 A 30.5 A 45.18 0.79 AFFX-R2-EC-BIOB 2679.2 P 3191.1 P 2196.5 P 2688.94 0.82 AFFX-R2-EC-BIOC 5996.2 P 7147.2 P 6571.67 1.19 AFFX-R2-EC-BIOD 26971.7 P 37119.5 P 32045.61 1.38 AFFX-R2-P1-CRE 69433.6 P 84426.9 P 76930.22 1.22 AFFX-R2-BS-DAP 11.1 A 12.1 A 3.7 A 8.96 0.34 AFFX-R2-BS-LYS 7.4 A 2.2 A 229.3 P 79.64 31.14 AFFX-R2-BS-PHE 10.4 A 9.1 A 74.3 A 31.27 7.15 AFFX-R2-BS-THR 56.3 A 8.9 A 266.7 A 110.63 4.74 ______________________________________________________________________