Report Type: Expression Report Date: 06:46PM 04/26/2007 ______________________________________________________________________ Filename: Soybean COTY II2.CHP Probe Array Type: Soybean Algorithm: Statistical Probe Pair Thr: 8 Controls: Antisense ______________________________________________________________________ Alpha1: 0.05 Alpha2: 0.065 Tau: 0.015 Noise (RawQ): 2.320 Scale Factor (SF): 4.551 TGT Value: 500 Norm Factor (NF): 1.000 ______________________________________________________________________ Background: Avg: 77.04 Std: 1.13 Min: 74.30 Max: 79.60 Noise: Avg: 3.80 Std: 0.09 Min: 3.60 Max: 4.00 Corner+ Avg: 454 Count: 32 Corner- Avg: 15825 Count: 32 Central- Avg: 17228 Count: 9 ______________________________________________________________________ The following data represents probe sets that exceed the probe pair threshold and are not called "No Call". Total Probe Sets: 61078 Number Present: 19348 31.7% Number Absent: 41018 67.2% Number Marginal: 712 1.2% Average Signal (P): 2498.8 Average Signal (A): 52.1 Average Signal (M): 178.6 Average Signal (All): 828.6 ______________________________________________________________________ Spike Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-BIOB 678.9 P 1173.1 P 661.5 P 837.84 0.97 AFFX-BIOC 2480.9 P 2066.3 P 2273.61 0.83 AFFX-BIOD 4064.6 P 8310.2 P 6187.38 2.04 AFFX-CRE 28678.6 P 30426.8 P 29552.73 1.06 AFFX-DAP 43.4 A 67.1 A 5.6 A 38.68 0.13 AFFX-LYS 50.9 A 33.6 A 11.7 A 32.04 0.23 AFFX-PHE 4.0 A 5.2 A 20.4 A 9.84 5.14 AFFX-THR 10.5 A 9.8 A 26.0 A 15.45 2.48 AFFX-TRP 11.4 A 6.8 A 8.5 A 8.92 0.75 AFFX-R2-EC-BIOB 1265.3 P 1284.7 P 1019.6 P 1189.86 0.81 AFFX-R2-EC-BIOC 2741.5 P 3101.3 P 2921.41 1.13 AFFX-R2-EC-BIOD 12183.0 P 16438.3 P 14310.67 1.35 AFFX-R2-P1-CRE 35275.6 P 45060.5 P 40168.07 1.28 AFFX-R2-BS-DAP 11.3 A 4.0 A 58.5 A 24.62 5.16 AFFX-R2-BS-LYS 46.9 A 28.3 A 79.2 A 51.45 1.69 AFFX-R2-BS-PHE 67.6 A 6.9 A 9.6 A 28.04 0.14 AFFX-R2-BS-THR 85.1 A 11.3 A 32.8 A 43.07 0.39 ______________________________________________________________________