Report Type: Expression Report Date: 04:36PM 04/21/2007 ______________________________________________________________________ Filename: Soybean COTY END2.CHP Probe Array Type: Soybean Algorithm: Statistical Probe Pair Thr: 8 Controls: Antisense ______________________________________________________________________ Alpha1: 0.05 Alpha2: 0.065 Tau: 0.015 Noise (RawQ): 1.250 Scale Factor (SF): 10.988 TGT Value: 500 Norm Factor (NF): 1.000 ______________________________________________________________________ Background: Avg: 43.57 Std: 0.49 Min: 42.00 Max: 44.70 Noise: Avg: 1.69 Std: 0.03 Min: 1.50 Max: 1.80 Corner+ Avg: 176 Count: 32 Corner- Avg: 5264 Count: 32 Central- Avg: 5401 Count: 9 ______________________________________________________________________ The following data represents probe sets that exceed the probe pair threshold and are not called "No Call". Total Probe Sets: 61078 Number Present: 18041 29.5% Number Absent: 42294 69.2% Number Marginal: 743 1.2% Average Signal (P): 3077.8 Average Signal (A): 60.9 Average Signal (M): 218.8 Average Signal (All): 953.9 ______________________________________________________________________ Spike Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-BIOB 1134.2 P 1565.1 P 1174.5 P 1291.28 1.04 AFFX-BIOC 3653.5 P 2694.9 P 3174.22 0.74 AFFX-BIOD 7121.9 P 12438.6 P 9780.25 1.75 AFFX-CRE 45432.8 P 50715.6 P 48074.18 1.12 AFFX-DAP 29.1 A 35.3 A 5.8 A 23.40 0.20 AFFX-LYS 4.0 A 20.7 A 40.7 A 21.83 10.11 AFFX-PHE 4.2 A 35.3 A 10.9 A 16.81 2.57 AFFX-THR 15.2 A 13.1 A 9.0 A 12.45 0.59 AFFX-TRP 26.8 A 43.2 A 41.0 A 37.00 1.53 AFFX-R2-EC-BIOB 2275.8 P 2233.5 P 1697.7 P 2069.03 0.75 AFFX-R2-EC-BIOC 4699.4 P 4261.7 P 4480.55 0.91 AFFX-R2-EC-BIOD 18568.8 P 24262.8 P 21415.82 1.31 AFFX-R2-P1-CRE 60862.1 P 69319.3 P 65090.72 1.14 AFFX-R2-BS-DAP 33.7 A 4.2 A 11.0 A 16.30 0.33 AFFX-R2-BS-LYS 86.5 A 9.9 A 131.6 A 76.00 1.52 AFFX-R2-BS-PHE 7.3 A 12.8 A 5.7 A 8.57 0.78 AFFX-R2-BS-THR 36.8 A 140.0 A 63.0 A 79.92 1.71 ______________________________________________________________________